source code
/* The Computer Language Benchmarks Game
https://salsa.debian.org/benchmarksgame-team/benchmarksgame/
Contributed by Philip Rogers
Based on a javascript implementation by Jesse Millikan and Matt Baker
*/
import 'dart:io';
import 'dart:collection';
String readLine() => stdin.readLineSync();
String readInput() {
while(readLine().substring(0, 6) != '>THREE');
List<String> lines = new List();
String line = readLine();
while (line != null && line[0] != '>') {
lines.add(line);
line = readLine();
};
return lines.join('').toUpperCase();
}
HashMap<String, int> frequency(String sequence, int length) {
HashMap<String, int> freq = new HashMap<String, int>();
int n = sequence.length - length + 1;
String sub;
for (int i = 0; i < n; i++) {
sub = sequence.substring(i, i + length);
if (freq.containsKey(sub))
freq[sub] = freq[sub] + 1;
else
freq[sub] = 1;
}
return freq;
}
void sort(String sequence, int length) {
HashMap<String, int> freq = frequency(sequence, length);
List<String> keys = freq.keys.toList();
int n = sequence.length - length + 1;
keys.sort((a, b) => (freq[b] - freq[a]));
for (String key in keys) {
String count = (freq[key] * 100 / n).toStringAsFixed(3);
print('$key $count');
}
print('');
}
void find(String sequence, String string) {
HashMap<String, int> freq = frequency(sequence, string.length);
print('${(freq[string])}\t$string');
}
void main(args) {
String sequence = readInput();
if (sequence == null)
return;
sort(sequence, 1);
sort(sequence, 2);
find(sequence, 'GGT');
find(sequence, 'GGTA');
find(sequence, 'GGTATT');
find(sequence, 'GGTATTTTAATT');
find(sequence, 'GGTATTTTAATTTATAGT');
}
notes, command-line, and program output
NOTES:
64-bit Ubuntu quad core
Dart VM version: 2.8.1 (stable) (Unknown timestamp) on "linux_x64"
Wed, 06 May 2020 19:38:27 GMT
MAKE:
/usr/bin/dartanalyzer knucleotide.dart
make: /usr/bin/dartanalyzer: Command not found
make: [/home/dunham/8000-benchmarksgame/nanobench/makefiles/u64q.programs.Makefile:445: knucleotide.dart_run] Error 127 (ignored)
0.07s to complete and log all make actions
COMMAND LINE:
/usr/bin/dart knucleotide.dart 0 < knucleotide-input25000000.txt
PROGRAM OUTPUT:
A 30.295
T 30.151
C 19.800
G 19.754
AA 9.177
TA 9.132
AT 9.131
TT 9.091
CA 6.002
AC 6.001
AG 5.987
GA 5.984
CT 5.971
TC 5.971
GT 5.957
TG 5.956
CC 3.917
GC 3.911
CG 3.909
GG 3.902
1471758 GGT
446535 GGTA
47336 GGTATT
893 GGTATTTTAATT
893 GGTATTTTAATTTATAGT