The Computer Language
24.11 Benchmarks Game

reverse-complement C# .NET #6 program

source code

/* The Computer Language Benchmarks Game
   https://salsa.debian.org/benchmarksgame-team/benchmarksgame/

   Contributed by Peperud
   Modified to reduce memory use by Anthony Lloyd
*/

using System;
using System.IO;
using System.Collections.Generic;
using System.Collections.Concurrent;
using System.Threading;

class RevCompSequence { public List<byte[]> Pages; public int StartHeader, EndExclusive; public Thread ReverseThread; }

public static class revcomp
{
    const int READER_BUFFER_SIZE = 1024 * 1024;
    const byte LF = 10, GT = (byte)'>', SP = 32;
    static BlockingCollection<byte[]> readQue = new BlockingCollection<byte[]>();
    static BlockingCollection<RevCompSequence> writeQue = new BlockingCollection<RevCompSequence>();
    static byte[] map;
    
    static int read(Stream stream, byte[] buffer, int offset, int count)
    {
        var bytesRead = stream.Read(buffer, offset, count);
        return bytesRead==count ? offset+count
             : bytesRead==0 ? offset
             : read(stream, buffer, offset+bytesRead, count-bytesRead);
    }
    static void Reader()
    {
        using (var stream = Console.OpenStandardInput())
        {
            int bytesRead;
            do
            {
                var buffer = new byte[READER_BUFFER_SIZE];
                bytesRead = read(stream, buffer, 0, READER_BUFFER_SIZE);
                readQue.Add(buffer);
            } while(bytesRead==READER_BUFFER_SIZE);
            readQue.CompleteAdding();
        }
    }

    static bool tryTake<T>(BlockingCollection<T> q, out T t) where T : class
    {
        t = null;
        while(!q.IsCompleted && !q.TryTake(out t)) Thread.SpinWait(0);
        return t!=null;
    }

    static void Grouper()
    {
        // Set up complements map
        map = new byte[256];
        for (byte b=0; b<255; b++) map[b]=b;
        map[(byte)'A'] = (byte)'T';
        map[(byte)'B'] = (byte)'V';
        map[(byte)'C'] = (byte)'G';
        map[(byte)'D'] = (byte)'H';
        map[(byte)'G'] = (byte)'C';
        map[(byte)'H'] = (byte)'D';
        map[(byte)'K'] = (byte)'M';
        map[(byte)'M'] = (byte)'K';
        map[(byte)'R'] = (byte)'Y';
        map[(byte)'T'] = (byte)'A';
        map[(byte)'V'] = (byte)'B';
        map[(byte)'Y'] = (byte)'R';
        map[(byte)'a'] = (byte)'T';
        map[(byte)'b'] = (byte)'V';
        map[(byte)'c'] = (byte)'G';
        map[(byte)'d'] = (byte)'H';
        map[(byte)'g'] = (byte)'C';
        map[(byte)'h'] = (byte)'D';
        map[(byte)'k'] = (byte)'M';
        map[(byte)'m'] = (byte)'K';
        map[(byte)'r'] = (byte)'Y';
        map[(byte)'t'] = (byte)'A';
        map[(byte)'v'] = (byte)'B';
        map[(byte)'y'] = (byte)'R';

        var startHeader = 0;
        var i = 0;
        bool afterFirst = false;
        var data = new List<byte[]>();
        byte[] bytes;
        while (tryTake(readQue, out bytes))
        {
            data.Add(bytes);
            while((i=Array.IndexOf<byte>(bytes, GT, i+1))!=-1)
            {
                var sequence = new RevCompSequence { Pages = data
                    , StartHeader = startHeader, EndExclusive = i };
                if(afterFirst)
                    (sequence.ReverseThread = new Thread(() => Reverse(sequence))).Start();
                else
                    afterFirst = true;
                writeQue.Add(sequence);
                startHeader = i;
                data = new List<byte[]> { bytes };
            }
        }
        i = Array.IndexOf<byte>(data[data.Count-1],0,0);
        var lastSequence = new RevCompSequence { Pages = data
            , StartHeader = startHeader, EndExclusive = i==-1 ? data[data.Count-1].Length : i };
        Reverse(lastSequence);
        writeQue.Add(lastSequence);
        writeQue.CompleteAdding();
    }

    static void Reverse(RevCompSequence sequence)
    {
        var startPageId = 0;
        var startBytes = sequence.Pages[0];
        var startIndex = sequence.StartHeader;

        // Skip header line
        while((startIndex=Array.IndexOf<byte>(startBytes, LF, startIndex))==-1)
        {
            startBytes = sequence.Pages[++startPageId];
            startIndex = 0;
        }

        var endPageId = sequence.Pages.Count - 1;
        var endIndex = sequence.EndExclusive - 1;
        if(endIndex==-1) endIndex = sequence.Pages[--endPageId].Length-1;
        var endBytes = sequence.Pages[endPageId];
        
        // Swap in place across pages
        do
        {
            var startByte = startBytes[startIndex];
            if(startByte<SP)
            {
                if (++startIndex == startBytes.Length)
                {
                    startBytes = sequence.Pages[++startPageId];
                    startIndex = 0;
                }
                if (startIndex == endIndex && startPageId == endPageId) break;
                startByte = startBytes[startIndex];
            }
            var endByte = endBytes[endIndex];
            if(endByte<SP)
            {
                if (--endIndex == -1)
                {
                    endBytes = sequence.Pages[--endPageId];
                    endIndex = endBytes.Length - 1;
                }
                if (startIndex == endIndex && startPageId == endPageId) break;
                endByte = endBytes[endIndex];
            }

            startBytes[startIndex] = map[endByte];
            endBytes[endIndex] = map[startByte];

            if (++startIndex == startBytes.Length)
            {
                startBytes = sequence.Pages[++startPageId];
                startIndex = 0;
            }
            if (--endIndex == -1)
            {
                endBytes = sequence.Pages[--endPageId];
                endIndex = endBytes.Length - 1;
            }
        } while (startPageId < endPageId || (startPageId == endPageId && startIndex < endIndex));
        if (startIndex == endIndex) startBytes[startIndex] = map[startBytes[startIndex]];
    }

    static void Writer()
    {
        using (var stream = Console.OpenStandardOutput())
        {
            bool first = true;
            RevCompSequence sequence;
            while (tryTake(writeQue, out sequence))
            {
                var startIndex = sequence.StartHeader;
                var pages = sequence.Pages;
                if(first)
                {
                    Reverse(sequence);
                    first = false;
                }
                else
                {
                    sequence.ReverseThread?.Join();
                }
                for (int i = 0; i < pages.Count - 1; i++)
                {
                    var bytes = pages[i];
                    stream.Write(bytes, startIndex, bytes.Length - startIndex);
                    startIndex = 0;
                }
                stream.Write(pages[pages.Count-1], startIndex, sequence.EndExclusive - startIndex);
            }
        }
    }

    public static void Main(string[] args)
    {
        new Thread(Reader).Start();
        new Thread(Grouper).Start();
        Writer();
    }
}
    

notes, command-line, and program output

NOTES:
64-bit Ubuntu quad core
.NET SDK 9.0.100
Host Version: 9.0.0
Commit: 9d5a6a9aa4

<OutputType>Exe
<TargetFramework>net9.0
<ImplicitUsings>enable
<Nullable>enable
<AllowUnsafeBlocks>true
<ServerGarbageCollection>true
<ConcurrentGarbageCollection>true
<PublishAot>false



 Wed, 13 Nov 2024 23:08:54 GMT

MAKE:
cp revcomp.csharpcore-6.csharpcore Program.cs
cp Include/csharpcore/program.csproj .
mkdir obj
cp Include/csharpcore/project.assets.json ./obj
/opt/src/dotnet-sdk-9.0.100/dotnet build -c Release --use-current-runtime  	
  Determining projects to restore...
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj : warning NU1900: Error occurred while getting package vulnerability data: Unable to load the service index for source https://api.nuget.org/v3/index.json.
  Restored /home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj (in 6.32 sec).
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj : warning NU1900: Error occurred while getting package vulnerability data: Unable to load the service index for source https://api.nuget.org/v3/index.json.
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(16,21): warning CS8981: The type name 'revcomp' only contains lower-cased ascii characters. Such names may become reserved for the language. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(14,45): warning CS8618: Non-nullable field 'Pages' must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring the field as nullable. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(14,104): warning CS8618: Non-nullable field 'ReverseThread' must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring the field as nullable. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(48,13): warning CS8625: Cannot convert null literal to non-nullable reference type. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(49,48): warning CS8601: Possible null reference assignment. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(22,19): warning CS8618: Non-nullable field 'map' must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring the field as nullable. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
  program -> /home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/bin/Release/net9.0/linux-x64/program.dll

Build succeeded.

/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj : warning NU1900: Error occurred while getting package vulnerability data: Unable to load the service index for source https://api.nuget.org/v3/index.json.
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj : warning NU1900: Error occurred while getting package vulnerability data: Unable to load the service index for source https://api.nuget.org/v3/index.json.
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(16,21): warning CS8981: The type name 'revcomp' only contains lower-cased ascii characters. Such names may become reserved for the language. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(14,45): warning CS8618: Non-nullable field 'Pages' must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring the field as nullable. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(14,104): warning CS8618: Non-nullable field 'ReverseThread' must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring the field as nullable. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(48,13): warning CS8625: Cannot convert null literal to non-nullable reference type. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(49,48): warning CS8601: Possible null reference assignment. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/Program.cs(22,19): warning CS8618: Non-nullable field 'map' must contain a non-null value when exiting constructor. Consider adding the 'required' modifier or declaring the field as nullable. [/home/dunham/all-benchmarksgame/benchmarksgame_i53330/revcomp/tmp/program.csproj]
    8 Warning(s)
    0 Error(s)

Time Elapsed 00:00:11.41

13.38s to complete and log all make actions

COMMAND LINE:
 ./bin/Release/net9.0/linux-x64/program 0 < revcomp-input100000001.txt

(TRUNCATED) PROGRAM OUTPUT:
>ONE Homo sapiens alu
CTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTC
GCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTC
AAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGC
CCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT
CGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGG
CGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAG
TGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCT
GCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTT
GTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACC
TCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGC
GCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGA
TCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCC
GAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAG
AGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGC
CCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTT
GAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTG
CAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAT
TACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCA
CCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTC
CCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTC
GCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTC
CCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGC
CACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAG
GCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGG
ATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCA
GGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCG
ATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGC
TAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC
TCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGA
GCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAG
TGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTC
AGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATT
TTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGG
TGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCG
GCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCG
GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTA
GCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACG
GGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCC
TCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGAC
GGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACC
TCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAG
GCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATG
TTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAA
GTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCT
GTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGG
TTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCA
CGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGG
TCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTAC
AGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTG
GAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCT
CCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATT
TTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTG
ACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC
CGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCG
CGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCT
CCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAG
TAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATC
CGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTT
TTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCA
CTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGG
GATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTT
TCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGC
CTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGT
CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGC
CTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCG
CGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGC
CAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCT
GGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGC
CCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAA
GCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCC
GGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCG
AACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCG
TGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTG
CAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGC
CTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGT
ATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTC
AGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGC
CCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATC
TCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGA
GTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAG
ACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCC
GCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGA
GACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCA
ACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTA
CAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACC
ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCC
AAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGC
TCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCC
GGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCA
CCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGC
TGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGAT
TACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGG
CTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGAT
TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTA
ATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTC
CTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGC
CACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTG
GCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAG
CCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTT
TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTG
ATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGC
CTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGC
TCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGC
TGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGG
GTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTC
GGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGG
AGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTC
CGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC
GCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTT
GGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGT
GCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGT
CGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTT
CAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACG
CCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTC
TCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAG
GCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGA
GTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCC
TGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTT
TGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGAC
CTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCG
CGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCG
ATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCC
CGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTA
GAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCG
CCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTT
TGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACT
GCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGA
TTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTC
ACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCT
CCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCT
CGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCT
CCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCG
CCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCA
GGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGG
GATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCC
AGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGC
GATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGG
CTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAA
CTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTG
AGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCA
GTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCT
CAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTAT
TTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAG
GTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCC
GGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTC
GGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGT
AGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGAC
GGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGC
CTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGA
CGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAC
CTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACA
GGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCAT
GTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAA
AGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTC
TGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGG
GTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACC
ACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTG
GTCTCGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTA
CAGGCGTGAGCCACCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCT
GGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTC
TCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAAT
TTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCT
GACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCA
CCGCGCCCGGCCTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGC
GCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCC
TCCCGAGTAGCTGGGATTACAGGCGCGCGCCACCACGCCCGGCTAATTTTTGTATTTTTA
GTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGAT
CCGCCCGCCTCGGCCTCCCAAAGTGCTGGGA