source code
/* The Computer Language Benchmarks Game
https://salsa.debian.org/benchmarksgame-team/benchmarksgame/
Contributed by Philip Rogers
Based on a javascript implementation by Jesse Millikan and Matt Baker
+ null safety
*/
import 'dart:io';
import 'dart:collection';
String readLine() => stdin.readLineSync() ?? '>>>>>>';
String readInput() {
while (readLine().substring(0, 6) != '>THREE');
final lines = <String>[];
String line = readLine();
while (line[0] != '>') {
lines.add(line);
line = readLine();
}
;
return lines.join('').toUpperCase();
}
HashMap<String, int> frequency(String sequence, int length) {
HashMap<String, int> freq = new HashMap<String, int>();
int n = sequence.length - length + 1;
String sub;
for (int i = 0; i < n; i++) {
sub = sequence.substring(i, i + length);
if (freq.containsKey(sub))
freq[sub] = (freq[sub] ?? 0) + 1;
else
freq[sub] = 1;
}
return freq;
}
void sort(String sequence, int length) {
HashMap<String, int> freq = frequency(sequence, length);
List<String> keys = freq.keys.toList();
int n = sequence.length - length + 1;
keys.sort((a, b) {
int _a = freq[a] ?? 0;
int _b = freq[b] ?? 0;
return _b - _a;
});
for (String key in keys) {
String count = ((freq[key] ?? 0) * 100 / n).toStringAsFixed(3);
print('$key $count');
}
print('');
}
void find(String sequence, String string) {
HashMap<String, int> freq = frequency(sequence, string.length);
print('${(freq[string])}\t$string');
}
void main(args) {
String sequence = readInput();
sort(sequence, 1);
sort(sequence, 2);
find(sequence, 'GGT');
find(sequence, 'GGTA');
find(sequence, 'GGTATT');
find(sequence, 'GGTATTTTAATT');
find(sequence, 'GGTATTTTAATTTATAGT');
}
notes, command-line, and program output
NOTES:
64-bit Ubuntu quad core
Dart SDK version: 3.5.4 (stable)
Wed Oct 16 16:18:51 2024
Wed, 23 Oct 2024 04:03:17 GMT
MAKE:
/opt/src/dart-sdk/bin/dart analyze
Analyzing tmp...
No issues found!
3.61s to complete and log all make actions
COMMAND LINE:
/opt/src/dart-sdk/bin/dart run knucleotide.dartjit 0 < knucleotide-input25000000.txt
PROGRAM OUTPUT:
A 30.295
T 30.151
C 19.800
G 19.754
AA 9.177
TA 9.132
AT 9.131
TT 9.091
CA 6.002
AC 6.001
AG 5.987
GA 5.984
CT 5.971
TC 5.971
GT 5.957
TG 5.956
CC 3.917
GC 3.911
CG 3.909
GG 3.902
1471758 GGT
446535 GGTA
47336 GGTATT
893 GGTATTTTAATT
893 GGTATTTTAATTTATAGT